• LAB T5.1

  Transcriptome v5.1

• LAB T6.1

  Transcriptome v6.1

• LAB 3.60

  LAB genome v3.60

• QLD 1.83

  QLD genome

• LAB genome v3.60

  LAB360 genome using BLAST in WebApollo

• TPM

  TPM for genes in LAB360 and QLD183 genomes

• QLD genome v 1.83

  QLD183 genome using BLAST in WebApollo

• LAB360

  Browse the LAB Genome

• QLD183

  Browse the QLD Genome

• Gene ATLAS

  Patterns of Gene Expression and links to Gene map and Transcript information
  Version 5     Version 6

• microRNA ATLAS
  

  Chromosome location of miR genes, hairpin structures of pre-miRNAs and links to target genes Version 5     Version 6

• Benth Babelfish

  Relates genes, transcripts and scaffold locations between Solgenomic's and our assembies.

• Nb LAB Biocommons WebApollo

  under construction

• amiR

  Vectors and Designer for artificial miRNAs

• RNAi

  Vectors and Designer for hpRNA silencing

• CRISPR Nickase

  Find sites (reduced off-target) and design constructs

• CRISPR U6-Cas9

  Find sites (fewer) and design constructs

• CRISPR tRNA-Cas9

  Find sites (more) and design constructs

Vectors

• RNAi Vectors

  pHannibal, pKannibal and pHellsgate Vectors

• amiR Vectors

  pBlueGreen Vector for primer designer system

• VIGS Vectors

  p35S:PVX and pCMV Vectors

• Expression Vectors

  pART7 and pART27 Vectors

Plasmid Bank

In-house plasmids

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RNAi Target Tester

Quickstart H.armigera Acetylcholinesterase vs the animal spectrum

For predicting cross-silencing in Trans-Kingdom RNAi

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Simple Sequence Manipulations

Extract a Genomic Seq

Reverse Complement

Protein Cleanup

Translate & Codon Usage

File splitter

Synteny Viewer

N counter

N placer

Repeat Profiles

Repeat placer

Repeat placer LAB JPN USA

N placer LAB JPN USA

Codon Preference Analysis

Julia's Codon Profiling

Perfect Protein Code

Perfect Protein Display Code

Perfect Protein for Jiyuan

Perfect Protein for Satomi

sequence query

Jcircos

leila upload

leila Rainfall detailed

leila Rainfall filtered

leila Rainfall Plot

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• Wild and Lab Isolate Descriptions

  Descriptions of wild and lab isolate collection sites and phenotypes.

• Details of 16c

  Description of the site and inserted sequence of 16c isolate.

• Evolution

  Evolution of N.benthamiana and the Suaveolentes

• Relatives

  Meet the Relatives

• Provenance

  Provenance of Lab Isolate

• Available Seed

  Seed of LAB and wild N.benthamiana

• Movies

  Time lapse movies of:
  GFP-labelled virus spread
  mobile silencing signal

• Sequencing

  Genome and Transcriptome Assemblies and Metrics

• Dataset Downloads

  Genome and Transcriptome Assemblies for downloading

• Dataset Details

  Details about tracks loaded onto GBROWSE and databases for BLAST.

• Consortium

  The people (past and present) in the Consortium

• Publications

  Our publications about the Benth Genome and Transcriptome

• Leave a Message

  Type your question or message into query box

The CTCB

We are at the
Gardens Point Campus
in Brisbane, Australia.

Email: ctcbenquiries@qut.edu.au
Phone: 07 3138 2000
Mon - Fri, 8.30am - 5pm

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